Associate Editor(s)-in-Chief:  Henry A. Hoff

"Using MAP-C [Mutation Analysis in Pools by Chromosome conformation capture], we show that inducible interchromosomal pairing between HAS1pr-TDA1pr alleles in saturated cultures of Saccharomyces yeast is mediated by three transcription factors, Leu3, Sdd4 (Ypr022c), and Rgt1. The coincident, combined binding of all three factors is strongest at the HAS1pr-TDA1pr locus and is also specific to saturated conditions. We applied MAP-C to further explore the biochemical mechanism of these contacts, and find they require the structured regulatory domain of Rgt1, but no known interaction partners of Rgt1."[1]

## Contents

* 1 Human genes
* 2 Gene expressions
* 3 Interactions
* 4 Consensus sequences
* 5 Binding site for
* 6 Complement copies
* 7 Inverse copies
* 8 Hypotheses
* 9 RGT samplings
* 9.1 Rgt (4560-2846) UTRs
* 9.2 Rgt negative direction (2811-2596) proximal promoters
* 9.3 Rgt negative direction (2596-1) distal promoters
* 9.4 Rgt positive direction (4050-1) distal promoters
* 10 Rgt random dataset samplings
* 10.1 Rgtr arbitrary (evens) (4560-2846) UTRs
* 10.2 Rgtr alternate (odds) (4560-2846) UTRs
* 10.3 Rgtr arbitrary negative direction (evens) (2846-2811) core promoters
* 10.4 Rgtr arbitrary positive direction (odds) (4445-4265) core promoters
* 10.5 Rgtr alternate positive direction (evens) (4445-4265) core promoters
* 10.6 Rgtr alternate negative direction (odds) (2811-2596) proximal promoters
* 10.7 Rgtr arbitrary positive direction (odds) (4265-4050) proximal promoters
* 10.8 Rgtr alternate positive direction (evens) (4265-4050) proximal promoters
* 10.9 Rgtr arbitrary negative direction (evens) (2596-1) distal promoters
* 10.10 Rgtr alternate negative direction (odds) (2596-1) distal promoters
* 10.11 Rgtr arbitrary positive direction (odds) (4050-1) distal promoters
* 10.12 Rgtr alternate positive direction (evens) (4050-1) distal promoters
* 11 Rgt analysis and results
* 12 Acknowledgements
* 13 See also
* 14 References
* 15 External links

## Human genes[edit | edit source]

Main article: Human genes

## Gene expressions[edit | edit source]

Main article: Gene expressions

## Interactions[edit | edit source]

Main article: Interaction gene transcriptions

## Consensus sequences[edit | edit source]

Main article: Consensus sequence gene transcriptions

With HAS1 ending at zero and TDA1 beginning at above 1000 bp, Leu3 is from 536 - 545 nts yielding consensus sequences (C/G)C(G/T)NNNN(A/C)G(C/G), 569 - 574 Mig1 (C/T)(C/T)CC(A/G)G and Sdd4 (A/C/T)CCCAC, 585 - 592 Rgt1 (A/T)(A/T)N(A/T)(C/T)CCG, 610 - 617 Rgt1 (A/T)(A/T)N(A/T)(C/T)CCG, 630 - 637 Rgt CGG(A/G)(A/T)N(A/T)(A/T).[1]

## Binding site for[edit | edit source]

## Complement copies[edit | edit source]

Main article: Complement copy gene transcriptions

## Inverse copies[edit | edit source]

Main article: Inverse copy gene transcriptions

With HAS1 ending at zero and TDA1 beginning at above 1000 bp, 585 - 592 Rgt1 (A/T)(A/T)N(A/T)(C/T)CCG, 610 - 617 Rgt1 (A/T)(A/T)N(A/T)(C/T)CCG, 630 - 637 Rgt CGG(A/G)(A/T)N(A/T)(A/T), the third Rgt1 is the inverse of the first two.[1]

## Hypotheses[edit | edit source]

Main article: Hypotheses

1. A1BG has no regulatory elements in either promoter.
2. A1BG is not transcribed by a regulatory element.
3. No regulatory element participates in the transcription of A1BG.

## RGT samplings[edit | edit source]

Copying a responsive elements consensus sequence CGGAACTA or CGGGACTT and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CGG(A/G)(A/T)N(A/T)(A/T) (starting with SuccessablesRGT.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

1. negative strand, negative direction, looking for CGG(A/G)(A/T)N(A/T)(A/T), 0.
2. positive strand, negative direction, looking for CGG(A/G)(A/T)N(A/T)(A/T), 2, CGGAAGTT at 2732, CGGGAAAA at 2459.
3. positive strand, positive direction, looking for CGG(A/G)(A/T)N(A/T)(A/T), 1, CGGGTCAA at 3380.
4. negative strand, positive direction, looking for CGG(A/G)(A/T)N(A/T)(A/T), 0.
5. complement, negative strand, negative direction, looking for GCC(C/T)(A/T)N(A/T)(A/T), 2, GCCTTCAA at 2732, CGGCTTTT at 2459.
6. complement, positive strand, negative direction, looking for GCC(C/T)(A/T)N(A/T)(A/T), 0.
7. complement, positive strand, positive direction, looking for GCC(C/T)(A/T)N(A/T)(A/T), 0.
8. complement, negative strand, positive direction, looking for GCC(C/T)(A/T)N(A/T)(A/T), 1, GCCCAGTT at 3380.
9. inverse complement, negative strand, negative direction, looking for (A/T)(A/T)N(A/T)(C/T)CCG, 3, ATTTTCCG at 3442, TTTTTCCG at 1108, AACTCCCG at 89.
10. inverse complement, positive strand, negative direction, looking for (A/T)(A/T)N(A/T)(C/T)CCG, 0.
11. inverse complement, positive strand, positive direction, looking for (A/T)(A/T)N(A/T)(C/T)CCG, 2, TACTCCCG at 3480, AATATCCG at 2551.
12. inverse complement, negative strand, positive direction, looking for (A/T)(A/T)N(A/T)(C/T)CCG, 0.
13. inverse negative strand, negative direction, looking for (A/T)(A/T)N(A/T)(A/G)GGC, 0.
14. inverse positive strand, negative direction, looking for (A/T)(A/T)N(A/T)(A/G)GGC, 3, TAAAAGGC at 3442, AAAAAGGC at 1108, TTGAGGGC at 89.
15. inverse positive strand, positive direction, looking for (A/T)(A/T)N(A/T)(A/G)GGC, 0.
16. inverse negative strand, positive direction, looking for (A/T)(A/T)N(A/T)(A/G)GGC, 2, ATGAGGGC at 3480, TTATAGGC at 2551.

### Rgt (4560-2846) UTRs[edit | edit source]

1. Negative strand, negative direction: ATTTTCCG at 3442.

### Rgt negative direction (2811-2596) proximal promoters[edit | edit source]

1. Positive strand, negative direction: CGGAAGTT at 2732.

### Rgt negative direction (2596-1) distal promoters[edit | edit source]

1. Negative strand, negative direction: TTTTTCCG at 1108, AACTCCCG at 89.
2. Positive strand, negative direction: CGGGAAAA at 2459.

### Rgt positive direction (4050-1) distal promoters[edit | edit source]

1. Positive strand, positive direction: CGGGTCAA at 3380.
2. Positive strand, positive direction: TACTCCCG at 3480, AATATCCG at 2551.

## Rgt random dataset samplings[edit | edit source]

1. Rgtr0: 4, CGGGAAAT at 4126, CGGGATTA at 3974, CGGGTGTT at 3707, CGGAATAA at 2016.
2. Rgtr1: 7, CGGGAGAA at 2796, CGGGTCAA at 2778, CGGGTAAA at 1816, CGGATAAA at 1304, CGGAACTT at 941, CGGGTCTA at 605, CGGGAGAT at 399.
3. Rgtr2: 10, CGGGTAAT at 3980, CGGGACTT at 3502, CGGGTTTT at 2823, CGGGTCAA at 2186, CGGGAAAA at 2081, CGGGTTTA at 1670, CGGATTAT at 1582, CGGGTGAT at 1136, CGGGTCAA at 142, CGGGAATA at 95.
4. Rgtr3: 4, CGGGTGTT at 4496, CGGGAGAA at 2916, CGGATCTA at 2568, CGGAAAAT at 763.
5. Rgtr4: 6, CGGAAATA at 4386, CGGAAGTA at 2556, CGGGTGAT at 1820, CGGATTAT at 618, CGGAAGAA at 577, CGGATTTA at 560.
6. Rgtr5: 3, CGGGTCAT at 4052, CGGGTTTT at 2976, CGGGAGAT at 1745.
7. Rgtr6: 3, CGGATTAA at 3611, CGGATTAA at 3393, CGGGTGAT at 2220.
8. Rgtr7: 7, CGGATGTA at 4101, CGGATAAA at 3306, CGGAACTT at 3199, CGGGATAA at 3105, CGGGTCTT at 3092, CGGGAAAA at 1504, CGGGACAA at 61.
9. Rgtr8: 9, CGGGACAA at 4095, CGGATGAA at 3885, CGGGTGTT at 3301, CGGGTTTA at 2561, CGGGAAAA at 2100, CGGAAATT at 2082, CGGGAATT at 1975, CGGGTTAT at 1335, CGGGAGAA at 1067.
10. Rgtr9: 5, CGGAACAA at 3065, CGGGTATT at 2781, CGGGATTT at 2139, CGGGAATT at 1938, CGGGAAAT at 937.
11. Rgtr0ci: 5, AACATCCG at 4417, TTTACCCG at 4135, AAATCCCG at 3918, AAATCCCG at 2562, TTAATCCG at 2508.
12. Rgtr1ci: 8, AAAACCCG at 4435, TACTTCCG at 4076, TTTTTCCG at 3035, TAGACCCG at 2767, TAATCCCG at 2379, TTGTTCCG at 1643, TTATTCCG at 816, TAGACCCG at 680.
13. Rgtr2ci: 7, AATACCCG at 4226, TTTTCCCG at 4117, ATTTTCCG at 3561, AACTTCCG at 3396, ATCACCCG at 2365, ATTTCCCG at 812, ATAATCCG at 796.
14. Rgtr3ci: 2, ATAACCCG at 3905, TTGTCCCG at 2031.
15. Rgtr4ci: 4, TATTCCCG at 4354, ATTTCCCG at 3676, TAAATCCG at 2818, ATAATCCG at 778.
16. Rgtr5ci: 4, ATGATCCG at 4290, AATTTCCG at 3462, ATAATCCG at 2520, AAAACCCG at 2264.
17. Rgtr6ci: 7, TACTCCCG at 4335, AATTCCCG at 4143, TAAACCCG at 2189, TAGACCCG at 1601, TATTCCCG at 1492, TTAATCCG at 1188, ATCTTCCG at 698.
18. Rgtr7ci: 6, TAATTCCG at 4088, AAGTTCCG at 1826, TATTCCCG at 892, AAATTCCG at 434, TTAATCCG at 212, TAATCCCG at 33.
19. Rgtr8ci: 8, AACTTCCG at 4253, TTGTCCCG at 4051, TTCATCCG at 2442, ATTTTCCG at 2123, TTCACCCG at 1807, TTGACCCG at 1243, ATGATCCG at 968, AAGTTCCG at 118.
20. Rgtr9ci: 4, ATATCCCG at 4230, AATTTCCG at 2929, AAAACCCG at 2502, AATATCCG at 2098.

### Rgtr arbitrary (evens) (4560-2846) UTRs[edit | edit source]

1. Rgtr0: CGGGAAAT at 4126, CGGGATTA at 3974, CGGGTGTT at 3707.
2. Rgtr2: CGGGTAAT at 3980, CGGGACTT at 3502.
3. Rgtr4: CGGAAATA at 4386.
4. Rgtr6: CGGATTAA at 3611, CGGATTAA at 3393.
5. Rgtr8: CGGGACAA at 4095, CGGATGAA at 3885, CGGGTGTT at 3301.
6. Rgtr0ci: AACATCCG at 4417, TTTACCCG at 4135, AAATCCCG at 3918.
7. Rgtr2ci: AATACCCG at 4226, TTTTCCCG at 4117, ATTTTCCG at 3561, AACTTCCG at 3396.
8. Rgtr4ci: TATTCCCG at 4354, ATTTCCCG at 3676.
9. Rgtr6ci: TACTCCCG at 4335, AATTCCCG at 4143.
10. Rgtr8ci: AACTTCCG at 4253, TTGTCCCG at 4051.

### Rgtr alternate (odds) (4560-2846) UTRs[edit | edit source]

1. Rgtr3: CGGGTGTT at 4496, CGGGAGAA at 2916.
2. Rgtr5: CGGGTCAT at 4052, CGGGTTTT at 2976.
3. Rgtr7: CGGATGTA at 4101, CGGATAAA at 3306, CGGAACTT at 3199, CGGGATAA at 3105, CGGGTCTT at 3092.
4. Rgtr9: CGGAACAA at 3065.
5. Rgtr1ci: AAAACCCG at 4435, TACTTCCG at 4076, TTTTTCCG at 3035.
6. Rgtr3ci: ATAACCCG at 3905.
7. Rgtr5ci: ATGATCCG at 4290, AATTTCCG at 3462.
8. Rgtr7ci: TAATTCCG at 4088.
9. Rgtr9ci: ATATCCCG at 4230, AATTTCCG at 2929.

### Rgtr arbitrary negative direction (evens) (2846-2811) core promoters[edit | edit source]

1. Rgtr2: CGGGTTTT at 2823.
2. Rgtr4ci: TAAATCCG at 2818.

### Rgtr arbitrary positive direction (odds) (4445-4265) core promoters[edit | edit source]

1. Rgtr1ci: AAAACCCG at 4435.
2. Rgtr5ci: ATGATCCG at 4290.

### Rgtr alternate positive direction (evens) (4445-4265) core promoters[edit | edit source]

1. Rgtr4: CGGAAATA at 4386.
2. Rgtr0ci: AACATCCG at 4417.
3. Rgtr4ci: TATTCCCG at 4354.
4. Rgtr6ci: TACTCCCG at 4335.

### Rgtr alternate negative direction (odds) (2811-2596) proximal promoters[edit | edit source]

1. Rgtr1: CGGGAGAA at 2796, CGGGTCAA at 2778.
2. Rgtr9: CGGGTATT at 2781.
3. Rgtr1ci: TAGACCCG at 2767.

### Rgtr arbitrary positive direction (odds) (4265-4050) proximal promoters[edit | edit source]

1. Rgtr5: CGGGTCAT at 4052.
2. Rgtr7: CGGATGTA at 4101.
3. Rgtr1ci: TACTTCCG at 4076.
4. Rgtr3ci: ATAACCCG at 3905.
5. Rgtr7ci: TAATTCCG at 4088.
6. Rgtr9ci: ATATCCCG at 4230.

### Rgtr alternate positive direction (evens) (4265-4050) proximal promoters[edit | edit source]

1. Rgtr8: CGGGACAA at 4095.
2. Rgtr0ci: TTTACCCG at 4135.
3. Rgtr2ci: AATACCCG at 4226, TTTTCCCG at 4117.
4. Rgtr6ci: AATTCCCG at 4143.
5. Rgtr8ci: AACTTCCG at 4253, TTGTCCCG at 4051.

### Rgtr arbitrary negative direction (evens) (2596-1) distal promoters[edit | edit source]

1. Rgtr0: CGGAATAA at 2016.
2. Rgtr2: CGGGTCAA at 2186, CGGGAAAA at 2081, CGGGTTTA at 1670, CGGATTAT at 1582, CGGGTGAT at 1136, CGGGTCAA at 142, CGGGAATA at 95.
3. Rgtr4: CGGAAGTA at 2556, CGGGTGAT at 1820, CGGATTAT at 618, CGGAAGAA at 577, CGGATTTA at 560.
4. Rgtr6: CGGGTGAT at 2220.
5. Rgtr8: CGGGTTTA at 2561, CGGGAAAA at 2100, CGGAAATT at 2082, CGGGAATT at 1975, CGGGTTAT at 1335, CGGGAGAA at 1067.
6. Rgtr0ci: AAATCCCG at 2562, TTAATCCG at 2508.
7. Rgtr2ci: ATCACCCG at 2365, ATTTCCCG at 812, ATAATCCG at 796.
8. Rgtr4ci: ATAATCCG at 778.
9. Rgtr6ci: TAAACCCG at 2189, TAGACCCG at 1601, TATTCCCG at 1492, TTAATCCG at 1188, ATCTTCCG at 698.
10. Rgtr8ci: TTCATCCG at 2442, ATTTTCCG at 2123, TTCACCCG at 1807, TTGACCCG at 1243, ATGATCCG at 968, AAGTTCCG at 118.

### Rgtr alternate negative direction (odds) (2596-1) distal promoters[edit | edit source]

1. Rgtr1: CGGGTAAA at 1816, CGGATAAA at 1304, CGGAACTT at 941, CGGGTCTA at 605, CGGGAGAT at 399.
2. Rgtr3: CGGATCTA at 2568, CGGAAAAT at 763.
3. Rgtr5: CGGGAGAT at 1745.
4. Rgtr7: CGGGAAAA at 1504, CGGGACAA at 61.
5. Rgtr9: CGGGATTT at 2139, CGGGAATT at 1938, CGGGAAAT at 937.
6. Rgtr1ci: TAATCCCG at 2379, TTGTTCCG at 1643, TTATTCCG at 816, TAGACCCG at 680.
7. Rgtr3ci: TTGTCCCG at 2031.
8. Rgtr5ci: ATAATCCG at 2520, AAAACCCG at 2264.
9. Rgtr7ci: AAGTTCCG at 1826, TATTCCCG at 892, AAATTCCG at 434, TTAATCCG at 212, TAATCCCG at 33.
10. Rgtr9ci: AAAACCCG at 2502, AATATCCG at 2098.

### Rgtr arbitrary positive direction (odds) (4050-1) distal promoters[edit | edit source]

1. Rgtr1: CGGGAGAA at 2796, CGGGTCAA at 2778, CGGGTAAA at 1816, CGGATAAA at 1304, CGGAACTT at 941, CGGGTCTA at 605, CGGGAGAT at 399.
2. Rgtr3: CGGGAGAA at 2916, CGGATCTA at 2568, CGGAAAAT at 763.
3. Rgtr5: CGGGTTTT at 2976, CGGGAGAT at 1745.
4. Rgtr7: CGGATAAA at 3306, CGGAACTT at 3199, CGGGATAA at 3105, CGGGTCTT at 3092, CGGGAAAA at 1504, CGGGACAA at 61.
5. Rgtr9: CGGAACAA at 3065, CGGGTATT at 2781, CGGGATTT at 2139, CGGGAATT at 1938, CGGGAAAT at 937.
6. Rgtr1ci: TTTTTCCG at 3035, TAGACCCG at 2767, TAATCCCG at 2379, TTGTTCCG at 1643, TTATTCCG at 816, TAGACCCG at 680.
7. Rgtr3ci: ATAACCCG at 3905, TTGTCCCG at 2031.
8. Rgtr5ci: AATTTCCG at 3462, ATAATCCG at 2520, AAAACCCG at 2264.
9. Rgtr7ci: AAGTTCCG at 1826, TATTCCCG at 892, AAATTCCG at 434, TTAATCCG at 212, TAATCCCG at 33.
10. Rgtr9ci: AATTTCCG at 2929, AAAACCCG at 2502, AATATCCG at 2098.

### Rgtr alternate positive direction (evens) (4050-1) distal promoters[edit | edit source]

1. Rgtr0: CGGGATTA at 3974, CGGGTGTT at 3707, CGGAATAA at 2016.
2. Rgtr2: CGGGTAAT at 3980, CGGGACTT at 3502, CGGGTTTT at 2823, CGGGTCAA at 2186, CGGGAAAA at 2081, CGGGTTTA at 1670, CGGATTAT at 1582, CGGGTGAT at 1136, CGGGTCAA at 142, CGGGAATA at 95.
3. Rgtr4: CGGAAGTA at 2556, CGGGTGAT at 1820, CGGATTAT at 618, CGGAAGAA at 577, CGGATTTA at 560.
4. Rgtr6: CGGATTAA at 3611, CGGATTAA at 3393, CGGGTGAT at 2220.
5. Rgtr8: CGGATGAA at 3885, CGGGTGTT at 3301, CGGGTTTA at 2561, CGGGAAAA at 2100, CGGAAATT at 2082, CGGGAATT at 1975, CGGGTTAT at 1335, CGGGAGAA at 1067.
6. Rgtr0ci: AAATCCCG at 3918, AAATCCCG at 2562, TTAATCCG at 2508.
7. Rgtr2ci: ATTTTCCG at 3561, AACTTCCG at 3396, ATCACCCG at 2365, ATTTCCCG at 812, ATAATCCG at 796.
8. Rgtr4ci: ATTTCCCG at 3676, TAAATCCG at 2818, ATAATCCG at 778.
9. Rgtr6ci: TAAACCCG at 2189, TAGACCCG at 1601, TATTCCCG at 1492, TTAATCCG at 1188, ATCTTCCG at 698.
10. Rgtr8ci: TTCATCCG at 2442, ATTTTCCG at 2123, TTCACCCG at 1807, TTGACCCG at 1243, ATGATCCG at 968, AAGTTCCG at 118.

## Rgt analysis and results[edit | edit source]

Main article: Complex locus A1BG and ZNF497 § Rgts

630 - 637 Rgt CGG(A/G)(A/T)N(A/T)(A/T).[1]

Reals or randoms | Promoters | direction | Numbers | Strands | Occurrences | Averages (± 0.1)

|
|
|
|
|
|

Reals | UTR | negative | 1 | 2 | 0.5 | 0.5
Randoms | UTR | arbitrary negative | 24 | 10 | 2.4 | 2.15
Randoms | UTR | alternate negative | 19 | 10 | 1.9 | 2.15
Reals | Core | negative | 0 | 2 | 0 | 0
Randoms | Core | arbitrary negative | 2 | 10 | 0.2 | 0.1
Randoms | Core | alternate negative | 0 | 10 | 0 | 0.1
Reals | Core | positive | 0 | 2 | 0 | 0
Randoms | Core | arbitrary positive | 2 | 10 | 0.2 | 0.3
Randoms | Core | alternate positive | 4 | 10 | 0.4 | 0.3
Reals | Proximal | negative | 1 | 2 | 0.5 | 0.5
Randoms | Proximal | arbitrary negative | 0 | 10 | 0 | 0.2
Randoms | Proximal | alternate negative | 4 | 10 | 0.4 | 0.2
Reals | Proximal | positive | 0 | 2 | 0 | 0
Randoms | Proximal | arbitrary positive | 6 | 10 | 0.6 | 0.65
Randoms | Proximal | alternate positive | 7 | 10 | 0.7 | 0.65
Reals | Distal | negative | 3 | 2 | 1.5 | 1.5 ± 0.5 (--2,+-1)
Randoms | Distal | arbitrary negative | 36 | 10 | 3.6 | 3.15
Randoms | Distal | alternate negative | 27 | 10 | 2.7 | 3.15
Reals | Distal | positive | 3 | 2 | 1.5 | 1.5 ± 0.5 (-+0,++3)
Randoms | Distal | arbitrary positive | 42 | 10 | 4.2 | 4.65
Randoms | Distal | alternate positive | 51 | 10 | 5.1 | 4.65

Comparison:

The occurrences of real Rgt UTRs and distals are less than the randoms, negative proximals are greater than randoms. This suggests that the real Rgts are likely active or activable.

## Acknowledgements[edit | edit source]

The content on this page was first contributed by: Henry A. Hoff.

## See also[edit | edit source]

* A1BG gene transcription core promoters
* A1BG gene transcriptions
* A1BG regulatory elements and regions
* A1BG response element negative results
* A1BG response element positive results
* Complex locus A1BG and ZNF497
* Mig1p gene transcriptions

## References[edit | edit source]

1. ↑ 1.0 1.1 1.2 1.3 Seungsoo Kim, Maitreya J Dunham, Jay Shendure (13 May 2019). "A combination of transcription factors mediates inducible interchromosomal contacts" (PDF). eLife. 8: e42499. doi:10.7554/eLife.42499.001. Retrieved 20 February 2021.CS1 maint: Multiple names: authors list (link)

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* Major histocompatibility complex class II gene family
* Major histocompatibility complex class III gene family
* Mammalogy
* Mathematical molecular biology
* Mediator complexes
* Medicine
* Melanocytes
* Membranes
* Metagenomes
* Molecular biology
* Molecular genetics
* Nitrogen metabolism
* Nucleotide Synthesis
* Origin of life
* Orthomolecular medicine
* Osteoarthritis
* Paleanthropology
* Paleontology
* Phosphate biochemistry
* Phosphate budgets
* Phosphate reactions
* Post translational modifications
* Principles of biosynthesis
* Protein isoform
* Proteins
* Proteomics
* Regulations
* Ribonucleotides
* Ribosomes
* RNA polymerases
* RNA polymerase II holoenzymes
* RNA polymerase II holoenzyme complexes
* RNA translations
* Salinity
* Stroke management
* Teeth
* Transports
* Vascular endothelial growth factor A
* What is a human?
* Upregulations
* Upstream and downstream
* ZSCAN22
* Zoology

Transcription resources|

* A1BG gene transcription core promoters
* A1BG gene transcriptions
* A1BG regulatory elements and regions
* A1BG response element gene transcriptions
* A1BG response element negative results
* A1BG response element positive results
* ABA-response element gene transcriptions
* Abf1 regulatory factor gene transcriptions
* A box gene transcriptions
* ACGT-containing element gene transcriptions
* Activating protein gene transcriptions
* Activating transcription factor gene transcriptions
* Adenylate–uridylate rich element gene transcriptions
* Adr1p gene transcriptions
* Aft1p gene transcriptions
* AGC box gene transcriptions
* AGCE gene transcriptions
* Alpha-amylase conserved element gene transcriptions
* Amino acid response element gene transcriptions
* AARE-like
* Androgen response element gene transcriptions
* Angiotensinogen core promoter element gene transcriptions
* Antioxidant-electrophile responsive element gene transcriptions
* ATA box gene transcriptions
* Auxin response factor gene transcriptions
* B box gene transcriptions
* Bioinformatics tool gene transcriptions
* Box gene transcriptions
* Bridge gene transcriptions
* CAAT box gene transcriptions
* CadC binding domain gene transcriptions
* Calcineurin-responsive transcription factor gene transcriptions
* Calcium-response element gene transcriptions
* cAMP response element gene transcriptions
* C and D boxes gene transcriptions
* Carbohydrate response element gene transcriptions
* Carbon source-responsive element gene transcriptions
* Carcinoembryonic antigen gene family
* CARE gene transcriptions
* CArG box gene transcriptions
* CAT box gene transcriptions
* Cat8p gene transcriptions
* Cbf1 regulatory factor gene transcriptions
* C box gene transcriptions
* CCCTC-binding factor gene transcriptions
* C-EBP box gene transcriptions
* Cell-cycle box gene transcriptions
* Cell cycle regulation gene transcriptions
* CENP-B box gene transcriptions
* CGCG box gene transcriptions
* Circadian control element gene transcriptions
* Cold-responsive element gene transcriptions
* Complement copy gene transcriptions
* Complement-inverse copy gene transcriptions
* Consensus sequence gene transcriptions
* Copper response element gene transcriptions
* Core promoter gene transcriptions
* Coupling element gene transcriptions
* CRE box gene transcriptions
* Cytokinin response regulator gene transcriptions
* Cytoplasmic polyadenylation element gene transcriptions
* DAF-16-associated element gene transcriptions
* DAF-16 binding element gene transcriptions
* D box gene transcriptions
* Defense and stress-responsive element gene transcriptions
* Degenerate nucleotide gene transcriptions
* Dispersed promoter gene transcriptions
* Distal promoter gene transcriptions
* DNA melting gene transcriptions
* DNA damage response element gene transcriptions
* DNA replication-related element gene transcriptions
* Downstream core element gene transcriptions
* Downstream promoter element gene transcriptions
* Downstream TFIIB recognition element gene transcriptions
* DREB box gene transcriptions
* E2 box gene transcriptions
* EIF4E basal element gene transcriptions
* EIN3 binding site gene transcriptions
* Enhancer activity copy gene transcriptions
* E box gene transcriptions
* Element gene transcriptions
* Endoplasmic reticulum stress response element gene transcriptions
* Endosperm expression gene transcriptions
* Enhancer box gene transcriptions
* Estrogen response element gene transcriptions
* Ethylene responsive element gene transcriptions
* Factor II B recognition element gene transcriptions
* F box gene transcriptions
* Focused promoter gene transcriptions
* Forkhead box gene transcriptions
* Fur box gene transcriptions
* GAAC element gene transcriptions
* Gal4p gene transcriptions
* Γ-interferon activated sequence gene transcriptions
* GARE gene transcriptions
* GA responsive complex gene transcriptions
* GATA gene transcriptions
* G box gene transcriptions
* GC box gene transcriptions
* GCC box gene transcriptions
* Gcn4p gene transcriptions
* Gcr1p gene transcriptions
* Gene expressions
* General factor II D gene transcriptions
* General regulatory factors
* General transcription factor II A gene transcriptions
* General transcription factor II B gene transcriptions
* General transcription factor II D gene transcriptions
* General transcription factor II F gene transcriptions
* General transcription factor II H gene transcriptions
* General transcription factor gene transcriptions
* Gene transcriptions
* GGC triplet gene transcriptions
* Gibberellin responsive element gene transcriptions
* GLM box gene transcriptions
* Glucocorticoid response element gene transcriptions
* Grainy head gene transcriptions
* Grainy head transcription factor gene transcriptions
* Growth hormone response element gene transcriptions
* GT boxes
* Hac1p gene transcriptions
* Hair color gene expressions
* H and ACA box gene transcriptions
* H box gene transcriptions
* Heat-responsive element gene transcriptions
* Hex sequence gene transcriptions
* HMG box gene transcriptions
* HNF gene transcriptions
* Homeobox gene transcriptions
* Hsf1p gene transcriptions
* HY box gene transcriptions
* Hybrid C, A boxes
* Hybrid C, G boxes
* Hybrid C, T boxes
* Hypoxia-inducible factor gene transcriptions
* Hypoxia response elements
* I box gene transcriptions
* Initiator element gene transcriptions
* Initiator-like element, TCT
* Inositol/choline-responsive elements
* Interaction gene transcriptions
* Interferon regulatory factors
* Inverse copy gene transcriptions
* Jasmonic acid-responsive element gene transcriptions
* K-boxes
* Kozak sequence gene transcriptions
* Kruppel-associated box gene transcriptions
* Krüppel-like factor gene transcriptions
* L box gene transcriptions
* Leu3 gene transcriptions
* M35 box gene transcriptions
* MADS box gene transcriptions
* Maf recognition element gene transcriptions
* M box gene transcriptions
* Mcm1 regulatory factor gene transcriptions
* Met31p box gene transcriptions
* Metal responsive element gene transcriptions
* Middle sporulation element gene transcriptions
* Mig1p gene transcriptions
* Model samplings
* Motif ten element gene transcriptions
* Msn2,4p gene transcriptions
* Musashi binding element gene transcriptions
* MYB recognition element gene transcriptions
* Myelocytomatosis transcription factor gene transcriptions
* Myocyte enhancer factor gene transcriptions
* N-boxes
* Ndt80p gene transcriptions
* Nuclear factor 1
* Nuclear factor 𝜿B
* Nuclear factor gene transcriptions
* Nuclear factor of activated T cell gene transcriptions (NFAT)
* Nuclear factor Y gene transcriptions
* Nutrient-sensing response element gene transcriptions
* Oaf1p gene transcriptions
* ORE1 binding site gene transcriptions
* p53 response element gene transcriptions
* P63 DNA-binding site gene transcriptions
* P box gene transcriptions
* Pdr1,3p gene transcriptions
* Peroxisome proliferator hormone response element gene transcriptions
* Phosphate starvation-response transcription factor gene transcriptions
* Pollen1 element gene transcriptions
* Polycomb response element gene transcriptions
* Preinitiation complex
* Preinitiation complex gene transcriptions
* Pribnow box gene transcriptions
* Prolamin box gene transcriptions
* Promoter gene transcriptions
* Proximal promoter gene transcriptions
* Promoter occurrence gene transcriptions
* Pyrimidine box gene transcriptions
* Q element gene transcriptions
* Rap1 regulatory factor gene transcriptions
* Reb1 general regulatory factor gene transcriptions
* Retinoblastoma control element gene transcriptions
* Retinoic acid response element gene transcriptions
* Rgt1p gene transcriptions
* Rlm1p gene transcriptions
* RNA polymerase II gene transcriptions
* RNA polymerase II holoenzyme complex
* Root specific element gene transcriptions
* ROR-response element gene transcriptions
* Rox1p gene transcriptions
* Rpn4p gene transcriptions
* R response element gene transcriptions
* SARE gene transcriptions
* Seed-specific element gene transcriptions
* Serum response element gene transcriptions
* Servenius sequence gene transcriptions
* Shoot specific element gene transcriptions
* Sip4p gene transcriptions
* Smp1p gene transcriptions
* Sp1 gene transcriptions
* Spaceflight gene expressions
* Specificity protein gene transcriptions
* STAT gene transcriptions
* Ste12p gene transcriptions
* Sterol response element gene transcriptions
* Synaptic Activity-Responsive Elements
* TACTAAC box gene transcriptions
* TAGteam gene transcriptions
* Tapetum box gene transcriptions
* TATA binding protein associated factor gene transcriptions
* TATA binding protein gene transcriptions
* TATA box gene transcriptions
* TAT box gene transcriptions
* TATC box gene transcriptions
* Tbf1 regulatory factor gene transcriptions
* T box gene transcriptions
* TCCACCATA element gene transcriptions
* TC element gene transcriptions
* TCT gene transcriptions
* TEA consensus sequence gene transcriptions
* Tec1p gene transcriptions
* Telomeric repeat DNA-binding factor gene transcriptions
* Tetradecanoylphorbol-13-acetate response element gene transcriptions
* TGF-β control elements (TCEs)
* TGF-β inhibitory elements (TIEs)
* Thyroid hormone response element gene transcriptions
* Transcriptional regulation
* Transcription bubble gene transcriptions
* Transcription factor gene transcriptions
* Transcription factor 3 gene transcriptions
* Transcription factory gene transcriptions
* Transcription start site gene transcriptions
* Translational control sequence gene transcriptions
* Transthyration gene transcriptions
* U box gene transcriptions
* Unfolded protein response element gene transcriptions
* Upstream response element gene transcriptions
* Upstream stimulatory factor gene transcriptions
* UTR promoter gene transcriptions
* V and P box gene transcriptions
* V box gene transcriptions
* Vhr1p gene transcriptions
* Vitamin D response element gene transcriptions
* W box gene transcriptions
* X box gene transcriptions
* Xbp1p gene transcriptions
* X core promoter element gene transcriptions
* Xenobiotic response element gene transcriptions
* Xenobiotic responsive element gene transcriptions
* Yap1p,2p gene transcriptions
* Y box gene transcriptions
* YY1 gene transcriptions
* Zap1p gene transcriptions
* Z box gene transcriptions
* Zinc responsive element gene transcriptions

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